ECCB 2010 NEXT-GEN SEQUENCING TUTORIAL PDF

Visualizing the next generation of sequencing data with GenomeView .. .. A .. Why inverse proteins are relatively abundant, J.-C. Nebel and C. Walawage, Protein & Peptide Letters, 17(7), Michal Nánási ([email protected] ) Website: (free download, tutorials, manual, . Next generation sequencing presents new challenges in large scale data at the European Conference of Computational Biology (ECCB) , Ghent. Tutorials, workshops and seminars To do bioinformatics well, you need to learn 3 things. ECCB Next-gen sequencing Tutorial (Thomas [email protected]).

Author: Kenris Basida
Country: Belgium
Language: English (Spanish)
Genre: Love
Published (Last): 8 October 2008
Pages: 245
PDF File Size: 18.92 Mb
ePub File Size: 11.53 Mb
ISBN: 845-1-75927-858-8
Downloads: 27370
Price: Free* [*Free Regsitration Required]
Uploader: Zulkizilkree

Citing articles via Web of Science 1. We also arranged with FResearch http: The purpose of the ECCB tutorial program is to provide participants with lectures and hands-on training, covering topics relevant to the field of bioinformatics.

We believe that for all of the rejected submissions, the reviewers provided high-quality reports. Ruben Kok Dutch Techcentre for Life Sciences had a decisive role in the Local Steering Committee, while Celia van Gelder is sequencjng once more for her support also in organisational matters.

The type and volume of the data produced by next-generation sequencing machines presents many previously unseen informatics challenges. Finally, all these efforts would be meaningless tutoriial the many participants from all over the world.

Next generation sequencing | Taverna

BioinformaticsVolume 32, Issue 17, 1 SeptemberPages i—i, https: Inhe co-founded the Vertebrate Resequencing Informatics group and manages the sequencing, informatics, and variation pipelines for large projects such as the genomes http: Working with next-generation sequencing data – A short sequenccing on QC, alignment, and variation analysis of next-generation sequencing data.

Today’s software and CPU time availability on clusters, super computers, and the grid allow for easy improvement of old files. The ECCB conferences are gathering about a thousand scientists and industry staff working at the intersection of a broad range of disciplines including computer science, mathematics, biology and medicine.

These technologies have resulted in a huge reduction in the cost of sequencing and has meant that many new researchers now have access to raw sequencing data. It is our pleasure to thank all the people and organizations that are making ECCB a successful and high-quality conference. We thank the authors nsxt-gen incorporating these suggestions as they were given little time to carry out minor revisions. Close mobile search navigation Article navigation.

  JAID BLACK NAUGHTY NANCY PDF

Sign In or Create an Account. As a consequence, databases and software are evolving rapidly, and new algorithms are required to improve computational analyses of massive biological or biomedical datasets. In this short course, we will introduce the participants to the different next-generation sequencing technologies, show how to do some basic quality checking of the data, how to run 2100 various next-generation alignment tools, create de novo sequence assemblies, and call variants such as SNPs, sequening indels, and structural variants from a reference sequence.

The added focus on reproducibility resulted in many authors opting to make their methods open source. At least sixteen exhibitor booths will be open throughout the conference in the central conference hall, which is well connected to the other activities at ECCB: This distinction was intended to create more clarity for both the reviewers and authors; the reviewing criteria were therefore explicitly stated in the submission guidelines.

Motivation In recent years, there has been a revolution in the area of DNA sequencing with the arrival of next-generation sequencing technologies.

ECCB The 15th European Conference on Computational Biology | Bioinformatics | Oxford Academic

Related articles in Web of Science Google Scholar. Details of the conference are available on the conference web site www. It is worth noting that many authors expressed their gratitude to the reviewers for their comments and suggestions. Going back in time, the fourteen previous editions of ECCB have been held in: Within each theme, the theme co-chairs assigned papers to expert referees, taking care to avoid any conflict of interest.

The ECCB science has been in the able hands of the following individuals, whose painstaking efforts have been vital: All poster abstracts are available on the conference web site. In this short course, we will introduce the participants to the different next-generation sequencing technologies, show how to do some basic quality checking of the data, how to run the various next-generation alignment tools, create de novo sequence assemblies, and call variants such as SNPs, short indels, and structural variants from a reference sequence.

Introduction to structural variation Summary of different types of structural variants Large insertions, deletions, inversions, translocations, copy number variants Overview of algorithms and tools for calling structural variants Practical examples of calling structural variants Visualisation of structural variants.

  BALLARD THE ATROCITY EXHIBITION PDF

Presenters

Linking sequence patterns and functionality of alpha-helical antimicrobial peptides. They will be presenting the latest scientific literature in the field of computational biology, bioinformatics, data stewardship, modeling and simulation, as well as new hardware, software and technology developments.

The ECCB organizing committee congratulates all these dynamic young scientists for their enthusiasm, which is essential to the future of research in computational biology.

Friday, 01 April Thanks to our academic and ecfb sponsors and to the careful control of conference costs, we could satisfy about two-thirds of the requests. We also thank, as our further supporting sponsors, Gemeentemuseum Den Haag, where also the opening reception will be held, the Municipality of The Hague, Bayer sponsoring the morning sequencinv and The Utrecht Bioinformatics Centre sponsoring the Poster Award.

As data integration is a pre-requisite for systems biology and translational research, the Semantic Web can bring relevant benefits in these areas.

In recent years, there has been a revolution in the area of DNA sequencing with the arrival of next-generation sequencint technologies. The reviewing and selection process was carried out using the EasyChair multi-track conference reviewing system www.

New sequending are now emerging in these fields with the recent advances in low-cost ultra-fast sequencing, bio-imaging and big data. It coordinates, integrates and sustains bioinformatics resources across its member states, enabling users in academia and industry to access vital data, tools, standards, compute and training services for research.

Submissions to this track should cross the boundaries of traditional academic science, or show developments that are directly relevant beyond academia or have potential for it. After thorough consideration and discussion, the ECCB theme co- chairs selected 24 proposals out of 71 submissions, mainly on the criteria of compatibility with the ECCB objectives, wide impact in the life sciences and the potential for attracting a large audience to the conference.